WebIf FALSE, return a list of ggplot objects. raster. Convert points to raster format, default is NULL which automatically rasterizes if plotting more than 100,000 cells. raster.dpi. Pixel … WebArguments plot. A ggplot2-based scatter plot. id. Name of variable used for coloring scatter plot. clusters. Vector of cluster ids to label. labels. Custom labels for the clusters
DimPlot with modified default settings — DimPlot_scCustom
WebJan 9, 2024 · 1 Answer. Sorted by: 1. Try changing server = T to server = TRUE. I'm fighting against a similar issue. In some cases, when you pass a logical to a function (in a list), the function can interpret it as a character. Share. Improve this answer. Follow. WebProvide either a full list of valid idents or a subset to be plotted last (on top) shuffle. Whether to randomly shuffle the order of points. This can be useful for crowded plots if points of … screwfix ip box
do_DimPlot: Wrapper for DimPlot. in SCpubr: Generate Publication …
WebNov 9, 2024 · # ' @param raster If true, plot with geom_raster, else use geom_tile. geom_raster may look blurry on # ' some viewing applications such as Preview due to how the raster is interpolated. Set this to FALSE # ' if you are encountering that issue (note that plots may take longer to produce/render). # ' @return Returns a ggplot2 plot object. # ' WebA tag already exists with the provided branch name. Many Git commands accept both tag and branch names, so creating this branch may cause unexpected behavior. WebJan 14, 2024 · Don’t panic, this is because in a recent update, raster = TRUE becomes default for FeaturePlot() and DimPlot() when your dataset contains more than 50,000 cells. Setting raster = FALSE will make the plots the way they were again. What is happening? Under the hood, when raster = TRUE, Seurat uses scattermore to rasterize the plots. screwfix ip65 outdoor lights